I have a similar issue - with me the server is recreating page 1 and 2 every 15 seconds, the main page alternates between the two on a set interval.
Page 1 and 2 can contain anything from 1 line (approx 30 bytes) upto 1mb of data... each page has a script section to highlight sections.
I havent been able to track down the exact circumstances but there are times when the scripts dont run, and others when they return an error ( as if only part of the page had loaded).
I will try and get some additional information like error line etc when I get back to work tomorrow.
Using 1.3 the script always runs, but sometimes still gives an error so that is probably a seperate issue of my code.
Gary NH