Custom made ajax vs JQM default ajax page loading mechanism

Custom made ajax vs JQM default ajax page loading mechanism

Hi,
I made a file which fetches data via PHP+MySQL and shows it on the page through $.ajax. The thing is that when I have data-transitions added to a link leading to that page the content from database doesn't load (it loads only after a page refresh). When I add data-ajax="false" to the link (which means I disable the transitions and default JQM ajax loading) everything works as new.

How do I do it so I have transitions and my custom $.ajax loading at the same time? 
Maybe there is a way to activate my $.ajax code after the JQM ajax finishes loading the page?

Any hints?