Help debugging jqueryUI template with jstree

Help debugging jqueryUI template with jstree

I am running an admin template that uses a ton of jquery ui and i am also using jstree. On the pages that the tree is not on the top menu works but since we added the tree to the page nothing in the header of the page is clickable. The template worked fine until we added the tree so it is surely a conflict happening with the tree and the page. I am seeking some help on this and am willing to pay for your time
 
Thanks