Problem publishing website

Problem publishing website

Hi,

I'm using jquery mobile. I've built my UI and save the html page to my project. 
I noticed that in the html page I have this references:

<script type="text/javascript" src="https://ajax.googleapis.com/ajax/libs/jquery/1.7.1/jquery.min.js">
        </script>
<script type="text/javascript" src="https://ajax.aspnetcdn.com/ajax/jquery.mobile/1.1.1/jquery.mobile-1.1.1.min.js">
        </script>

I tried to download these files from these links and I saved them into a new folder in my project.
Then I referenced them to the files of my project like the following:

<script type="text/javascript" src="/Scripts/jquery.min.js">
        </script>
<script type="text/javascript" src="/Scripts/query.mobile-1.1.1.min.js">
        </script>

When I run the project from visual studio I have no problems, everything works fine. 
But when I publish my website on iis, if I acess the link of website, the appearance of the objects is not working.
This only happens when I have these references pointed to js files in my folder Scripts. If the references are pointed to ajax site, then my project works fine in both ways: accessing by visual studio or accessing by published website.

I've already cheched the published folder of website and it has all the files that are needed to run the project, including the css and jquery.

Can you help?

Thank you